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python Signal Extraction And Segmentation (pySEAS)
==================================================

This is a python package for ICA signal extraction and segmentation of mesoscale calcium imaging videos. 

Publication
^^^^^^^^^^^^^

Weiser SC, Mullen BR, Ascencio D, Ackman JB (2023) Data-driven segmentation of cortical calcium dynamics. PLOS Computational Biology 19(5): e1011085. `article link <https://doi.org/10.1371/journal.pcbi.1011085>`_.

Installation
^^^^^^^^^^^^^

.. code-block:: bash

   pip install seas

Please see the :ref:`install-notes` for further troubleshooting details, and report any bugs you find to our `Github issues page <https://github.com/ackmanlab/pySEAS/issues>`_.


Test Data
^^^^^^^^^^
Test ica processed datasets are available for download from `Dryad <https://datadryad.org/stash/dataset/doi:10.7291/D1N96W>`_.


Contents
-------

.. toctree::
   :maxdepth: 2

   /seas.rst
   /examples.rst
   /install.rst