Index

A

abline() (in module seas.signalanalysis) apply_colormap() (in module seas.colormaps)

approximate_svd_linearity_transition() (in module seas.ica) averageWaveletPower() (seas.waveletAnalysis.waveletAnalysis method)

B

bound_mask() (seas.experiment.Experiment method) bound_movie() (seas.experiment.Experiment method)

bounding_box (seas.experiment.Experiment attribute) butterworth() (in module seas.signalanalysis)

C

chisquare_inv() (in module seas.waveletFunctions)

chisquare_solve() (in module seas.waveletFunctions) close() (seas.hdf5manager.hdf5manager method)

D

define_mask_boundaries() (seas.experiment.Experiment method) delete() (seas.hdf5manager.hdf5manager method) dfof() (in module seas.video) dfof_to_rescaled() (in module seas.colormaps) dir (seas.experiment.Experiment attribute)

domain_map() (in module seas.domains) downsample (seas.experiment.Experiment attribute) downsample() (in module seas.video) downsample_t (seas.experiment.Experiment attribute) draw_bounding_box() (in module seas.rois) (seas.experiment.Experiment method)

E

Experiment (class in seas.experiment)

experiment_sorter() (in module seas.filemanager)

F

familySig() (seas.waveletAnalysis.waveletAnalysis method) filter_comparison() (in module seas.ica)

filter_mean() (in module seas.ica) find_files() (in module seas.filemanager)

G

gaussian_smooth_2d() (in module seas.signalanalysis) get_basename() (in module seas.filemanager) get_domain_edges() (in module seas.domains) get_domain_map() (in module seas.domains) get_domain_rebuilt_timecourses() (in module seas.domains)

get_exp_span_string() (in module seas.filemanager) get_masked_region() (in module seas.rois) get_mpl_colormap() (in module seas.colormaps) get_padded_borders() (in module seas.domains) get_peak_separation() (in module seas.signalanalysis) globalWaveletSpectrum() (seas.waveletAnalysis.waveletAnalysis method)

H

hdf5manager (class in seas.hdf5manager)

I

ica_project() (seas.experiment.Experiment method)

insert_masked_region() (in module seas.rois) inverseWaveletTransform() (seas.waveletAnalysis.waveletAnalysis method)

K

keys() (seas.hdf5manager.hdf5manager method)

L

lag_n_autocorr() (in module seas.signalanalysis) linear_regression() (in module seas.signalanalysis) load() (in module seas.video) (seas.hdf5manager.hdf5manager method)

load_config() (in module seas.defaults) load_meta() (seas.experiment.Experiment method) load_rois() (seas.experiment.Experiment method) local_max() (in module seas.signalanalysis) local_min() (in module seas.signalanalysis)

M

make_mask() (in module seas.rois) module seas.colormaps seas.defaults seas.domains seas.experiment seas.filemanager seas.gui seas.hdf5manager seas.ica seas.rois seas.signalanalysis seas.video seas.waveletAnalysis seas.waveletFunctions

mosaic_movie() (in module seas.domains) movie (seas.experiment.Experiment attribute) movie_sorter() (in module seas.filemanager)

N

n_rotations (seas.experiment.Experiment attribute) name (seas.experiment.Experiment attribute)

nanCOI() (seas.waveletAnalysis.waveletAnalysis method) nanSig() (seas.waveletAnalysis.waveletAnalysis method) noiseFilter() (seas.waveletAnalysis.waveletAnalysis method)

O

open() (seas.hdf5manager.hdf5manager method)

P

path (seas.experiment.Experiment attribute) play() (in module seas.video)

plotPower() (seas.waveletAnalysis.waveletAnalysis method) print() (seas.hdf5manager.hdf5manager method) project() (in module seas.ica)

R

read_yaml() (in module seas.filemanager) rebuild() (in module seas.ica) rebuild_eigenbrain() (in module seas.ica) rebuild_mean_roi_timecourse() (in module seas.ica) rescale() (in module seas.video) rescaled_to_dfof() (in module seas.colormaps)

roi_loader() (in module seas.rois) rolling_mosaic_movie() (in module seas.domains) rotate() (in module seas.video) (seas.experiment.Experiment method) rotate_rois_with_video (seas.experiment.Experiment attribute) run_gui() (in module seas.gui)

S

save() (in module seas.video) (seas.hdf5manager.hdf5manager method) save_colorbar() (in module seas.colormaps) save_domain_map() (in module seas.domains) scale_video() (in module seas.video) seas.colormaps module seas.defaults module seas.domains module seas.experiment module seas.filemanager module seas.gui module seas.hdf5manager module

seas.ica module seas.rois module seas.signalanalysis module seas.video module seas.waveletAnalysis module seas.waveletFunctions module shape (seas.experiment.Experiment attribute) short_time_fourier_transform() (in module seas.signalanalysis) sort_experiments() (in module seas.filemanager) sort_noise() (in module seas.signalanalysis) sumAcrossPeriod() (seas.waveletAnalysis.waveletAnalysis method)

T

tdelay_correlation() (in module seas.signalanalysis)

W

wave_bases() (in module seas.waveletFunctions) wave_signif() (in module seas.waveletFunctions) wavelet() (in module seas.waveletFunctions)

waveletAnalysis (class in seas.waveletAnalysis) waveletFilter() (seas.waveletAnalysis.waveletAnalysis method) waveletTransform() (seas.waveletAnalysis.waveletAnalysis method) write_config() (in module seas.defaults)